Multi-genome View
Compare multiple rice genomes side by side — synteny, structural variants, and rearrangements visualised simultaneously.
SV Support
Structural variant tracks including insertions, deletions, inversions, and copy number variants from long-read sequencing.
Plugin Architecture
Extensible plugin system allowing custom track types, data adapters, and visualisation widgets.
Genome browser
JBrowse 2 provides a modern React-based genome browser with multi-track and multi-genome comparison capabilities.
New features in JBrowse 2
- Linear genome view with multiple tracks
- Circular (Circos-style) genome view
- Dotplot view for whole-genome alignment comparison
- Breakpoint split view for structural variant visualisation
- Hi-C contact matrix view