Reference Genome
Os-Nipponbare-Reference-IRGSP-1.0 — the gold-standard Oryza sativa reference sequence.
Gene Annotations
RAP-DB and MSU7 gene annotations including UTRs, introns, and functional descriptions.
Variant Tracks
SNP density tracks for all 1,001 accessions overlaid on the reference genome coordinates.
Genome browser
Navigate the rice reference genome interactively. Pan and zoom across chromosomes, toggle annotation tracks, and inspect individual variant sites.
Available tracks
- Reference sequence (IRGSP-1.0)
- RAP-DB gene models
- MSU7 gene annotations
- SNP density — all 1,001 accessions
- Repeat elements and transposons